Historical research now crucially involves the acquisition and use of digital sources. In History 9877A, students learn to find, harvest, manage, excerpt, cluster and analyze digital materials throughout the research process, from initial exploratory forays through the production of an electronic article or monograph which is ready to submit for publication.

Course Description

Three Scenarios

Why should you take a course in digital research methods?

1. You’ve just returned from a whirlwind trip to the archives. On your laptop you have about nine thousand digital photographs of various documents. You could spend the next few years going through the pictures one at a time and typing notes into a word processor. Or you could write a small script to convert each image into readable text and drop the whole batch into a custom search engine. In less than an hour you could be searching for words and phrases anywhere in your primary sources.

2. You discover that the Internet Archive has a collection of eight hundred online texts that are directly related to your research. You could look through the list of titles in your web browser and click on the links one at a time, scanning each to see if it is relevant. Even if you cut-and-paste notes from the sources to a word processor, it will still take you at least a few months to go through the collection. Or you could write a small script to download all of the sources to your own machine and run a clustering program on them. This sorts the texts into folders of closely related documents, then subdivides those by topic. In less than an hour, you would be able to visualize the contents of the whole collection and focus in on the topics that are of immediate interest to you.

3.  You’ve been working with the written corpus of a historically significant figure. You have the books and essays that he or she wrote, their diary entries and their correspondence with a large number of other individuals. How do you make sense of a lifetime of writing? Can you chart important changes in someone’s conceptual world? Spot the emergence of new ideas in the discourse of a community? Map the ever-changing social relations between a network of correspondents?

In this course you will learn to apply techniques that are currently used by fewer than one percent of working historians. Computation won’t magically do your research for you, but it will make you much more efficient. You can focus on close reading, interpretation and writing, and use machines to help you find, summarize, organize and visualize sources.

Prerequisites, Workload, Blogging and Evaluation

There are no prerequisites for the course other than a willingness to learn new things and the perseverance to keep working when you’re confused or when you realize that you could spend a lifetime learning about the topics and technologies that we will cover in class, and still not master them all. Students will come into the course with very different levels of experience and expertise. Some, probably most, will be familiar only with the rudiments of computer and internet use. A few may already be skilled programmers.

This course also requires that you spend at least a little bit of time each day (say 20-30 minutes) practicing your new skills. It’s a lot like learning a new language, learning to play a musical instrument or going to the gym. It is going to be hard at first, but be patient with yourself and ask a lot of questions. With daily practice, you will soon find ways to do your research and coursework faster and more efficiently. If you can’t commit to regular practice, however, you should probably not take this course. The techniques that you learn in this class build cumulatively week-by-week. In addition to regular practice, it is essential that you attend every meeting of the class and do the readings carefully.

Every student in the class will have an academic blog and will be required to make weekly posts to it.  These entries do not have to be long (300-500 words per week is ample). The use of blogging is to encourage you to engage in ‘reflective practice,’ that is, to force you to think about your learning and research as you are doing it. It also provides me with feedback for how the course is going. You can use each week’s blog entry to talk about what you learned, things that were clear or not, things you would like to know how to do, and so on.

Before the first class you should go to either WordPress or Blogger (not both) and create an account and a blog. If possible, create the blog under your own name; if not, choose something professional sounding. Post an introductory message about yourself and then send me the URL of your blog so that I can add you to the course blogroll for History 9877A.

You will be graded on your participation in class (20%) and on your reflective blogging (80%). There will be no midterm or final examinations, and no final paper.

Text and Requirements

There is one required text for this course.

Shotts, William E., Jr. The Linux Command Line: A Complete Introduction. No Starch Press, 2012.

In addition, you will need a computer that you can use daily (ideally a laptop that you can bring to every class) and a USB flash drive (32 Gb or larger).

GitHub Repository


Students and Auditors

Lesson 01: Linux Virtual Machines

  • Overview
    • An introduction to the course, the use of virtual machines, and the Linux operating system
  • Readings
    • Shotts Ch 1, What is the Shell?
    • (Optional after class) Virtual Box Manual, Ch. 1 First Steps
  • In-class activity
  • In-class discussion
    • Operating systems
      • Windows and Mac (built on Unix)
      • Linux (descended from Unix)
      • Dual-boot machines
    • Virtual machines
      • dedicated to your research
      • sits on top of a directory of your sources
      • build new or custom ones any time you need to
      • keep multiple versions and backups
      • run on any computer you have access to
      • synchronize over the cloud
      • scriptable
      • incorporate into extensive workflows
      • there is an exit strategy if you decide you want to return to Mac or Windows
  • Linux commands to study and practice
    • clear, date and cal
    • ls
    • pwd and cd
    • head, tail and less
    • file
    • cp and mv

Lesson 02: Basic Text Analysis

  • Overview
    • We can get some idea of what a text is about by studying the frequency of words in it
  • Readings
    • Shotts Ch 2, Navigation
    • Shotts Ch 3, Exploring the System
  • In-class activity
  • In-class discussion
    • Taxonomy of digital sources
      • text (ASCII, Unicode)
      • markup (XML, HTML, TEI)
      • human-readable and machine-readable
      • open vs. closed / proprietary formats
      • documents (MS Word, PDF)
      • … and lots more we will discuss as course continues
    • File naming conventions
      • Lowercase
      • Avoid blank spaces and punctuation except dot (.), dash (-) and underscore(_)
      • Specify dates like YYYYMMDD, e.g., 20130911
      • If you use numbers, left pad with zeros as appropriate. If you will have less than a hundred items, use one leading zero, e.g., 01, 02, …, 42, …, 99. For less than a thousand items, use two leading zeros, e.g., 001, 002, 042, …, 999.
  • Linux commands to study and practice
    • wget
    • wc
    • tr
    • redirection operators: <, >, |

Lesson 03: Pattern Matching and Permuted Term Indexing

  • Recap and Overview
    • Word frequencies can give us some idea of what a text is about
    • We can search for particular words or expressions in a text using regular expressions, a powerful pattern matching language
    • We can see how a particular word is used by building a permuted index (also called a concordance or a keyword in context (KWIC) listing)
  • Readings
    • Shotts Ch 4, Manipulating Files and Directories
    • Shotts Ch 5, Working with Commands
    • Shotts Ch 6, Redirection
  • In-class activity
  • In-class discussion
    • Using wc to confirm that your file has the same characteristics as another one
    • Fingerprinting documents, preventing bit rot, ensuring accurate communication: checksums, error correcting codes and cryptographic hashes
    • The supposed plasticity of digital representation
    • Regular expressions are very powerful, but they are not a good theoretical model for the structure of human natural languages
  • Linux commands to study and practice
    • mkdir
    • cp, mv and rm
    • filename wildcards
    • character classes (try using these with tr and egrep too)
    • type, which, man, apropos, whatis
    • wget
    • cat, head, tail and less
    • sort
    • uniq
    • ptx
    • redirection operators: <, >, >>|
    • /dev/null

Lesson 04: Batch Downloading and Building Simple Search Engines

  • Recap and Overview
    • We can download any online text and begin to make sense of it by analyzing word frequencies, searching for regular expressions and building a concordance
    • We can download arbitrarily large collections of sources automatically
    • Unlike our previous methods, a search engine can return sources ranked by relevance to a particular query
  • Readings
    • Shotts Ch 7, Seeing the World as the Shell Sees It
    • Shotts Ch 8, Advanced Keyboard Tricks
  • In-class activity
  • In-class discussion
  • Linux commands to study and practice

Lesson 05: Named Entity Recognition

  • Recap and Overview
    • We can automatically download arbitrarily large batches of files
    • We have a variety of techniques for analyzing text and finding patterns in it: word frequencies, concordances, regular expressions, search engines
    • A named entity recognizer is a program that goes through a text and tries to guess which words represent people, organizations, places or other kinds of entity
  • Readings
    • Shotts Ch 19, Regular Expressions
    • (Optional) Shotts Ch 12, A Gentle Introduction to vi
  • In-class activity
  • In-class discussion
    • Using probabilistic models for natural language
  • Linux commands to study and practice

Lesson 06: Optical Character Recognition

  • Recap and Overview
    • We have learned a variety of techniques for downloading texts, analyzing them and finding patterns in them
    • We can extract the (printed or typescript) text in photographs or digital scans of documents using OCR (optical character recognition)
    • Approximate regular expressions allow us to find terms that are close to a pattern, rather than matching it exactly
  • Readings
    • Shotts Ch 17, Searching for Files
    • Shotts Ch 18, Archiving and Backup
    • Shotts Ch 20, Text Processing
  • In-class activity
  • In-class discussion
    • Taxonomy of digital sources, continued
      • born-digital vs. digitized
      • pictures of text (scanner, digital camera)
      • OCR: optical character recognition
    • What kind of errors are introduced by OCR?
    • How does approximate / fuzzy pattern matching work?
  • Linux commands to study and practice
    • locate and find
    • touch
    • xargs
    • gzipgunzipzcat and zless
    • zip and unzip
    • bzip2
    • tar
    • cut and paste
    • join
    • comm and diff
    • convert, display and identify (ImageMagick)
    • tesseract
    • tre-agrep

REVIEW SESSION (22 Oct 2014)

Lesson 07: Working with PDFs

  • Recap and Overview
    • We have a wide variety of tools for working with texts
    • We can use optical character recognition (OCR) to extract printed or typeset text from digital images of documents
    • We can extract text, images, page images and full pages from PDFs with command line tools
  • Readings
    • xkcd, “Sandwich
    • Shotts Ch 9, Permissions
    • Shotts Ch 10, Processes
  • In-class activity
  • In-class discussion
    • How are PDFs structured?
  • Linux commands to study and practice

Lesson 08: Structured Data

Lesson 09: XML Parsing and Graph Visualization

  • Recap and Overview
    • One way to structure information inside of a human- and machine-readable text file is to store it in a table of rows and columns; not all information lends itself to this, however
    • A different way to structure information in text files is to use a markup language like HTML or XML
    • Computer programs can easily extract information from text files if it has been explicitly tagged
  • Readings
  • In-class activity
  • In-class discussion
    • What kinds of information can’t be represented in rows and columns?
    • Is writing markup the same as programming?
  • Linux commands to study and practice

Lesson 10: Simple Web Spider

  • Recap and Overview
    • Computer programs can extract information from text files if it has been explicitly tagged with XML or some other markup language
    • A web spider (also known as a crawler or bot) is a program that downloads a web page and processes it, extracts links to other web pages, and follows each in turn, processing them
  • Readings
    • Shotts Ch 24, Writing Your First Script
    • Shotts Ch 25, Starting a Project
    • Shotts Ch 26, Top-Down Design
    • Shotts Ch 27, Flow Control: Branching with If
  • In-class activity
  • In-class discussion
    • Problem, algorithm and implementation
  • Linux commands to study and practice
    • Review wget, xmlstarlet and graphviz
    • Bash scripting: variables, for loops, if statements